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Sirtuin
Enzyme
Enzyme
Sirtuins are a family of signaling proteins involved in metabolic regulation. They are ancient in animal evolution and appear to possess a highly conserved structure throughout all kingdoms of life. The name Sir2 comes from the yeast gene 'silent mating-type information regulation 2', the gene responsible for cellular regulation in yeast.
Yeast Sir2 and some, but not all, sirtuins are protein deacetylases. Unlike other known protein deacetylases, which simply hydrolyze acetyl-lysine residues, the sirtuin-mediated deacetylation reaction couples lysine deacetylation to NAD+ hydrolysis. This hydrolysis yields O-acetyl-ADP-ribose, the deacetylated substrate and nicotinamide, which is an inhibitor of sirtuin activity itself.
Sirtuins that deacetylate histones are structurally and mechanistically distinct from other classes of histone deacetylases (classes I, IIA, IIB and IV), which have a different protein fold and use Zn2+ as a cofactor.
Actions and species distribution
Sirtuins are a family of signaling proteins involved in metabolic regulation. Mammals possess seven sirtuins (SIRT1–7) that occupy different subcellular compartments: SIRT1, SIRT6 and SIRT7 are predominantly in the nucleus, SIRT2 in the cytoplasm, and SIRT3, SIRT4 and SIRT5 in the mitochondria.
History
Research on sirtuin protein was started in 1991 by Leonard Guarente of MIT. Interest in the metabolism of NAD heightened after the year 2000 discovery by Shin-ichiro Imai and coworkers in the Guarente laboratory that sirtuins are NAD+-dependent protein deacetylases .
Types
The first sirtuin was identified in yeast (a fungus) and named sir2. In more complex mammals, there are seven known enzymes that act in cellular regulation, as sir2 does in yeast. These genes are designated as belonging to different classes (I-IV), depending on their amino acid sequence structure. Several gram-positive prokaryotes as well as the gram-negative hyperthermophilic bacterium Thermotoga maritima possess sirtuins that are intermediate in sequence between classes, and these are placed in the "undifferentiated" or "U" class. In addition, several gram-positive bacteria, including Staphylococcus aureus and Streptococcus pyogenes, as well as several fungi carry macrodomain-linked sirtuins (termed "class M" sirtuins).
| Class | Subclass | Species | Intracellular | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| location | Activity | Cellular Function | Catalytic Domains | Histone Deacetylation Target | Non-Histone Deacetylation Target | Pathology | Bacteria | Yeast | Mouse | Human | ||||||||||||||||||
| I | a | Sir2, | ||||||||||||||||||||||||||
| Hst1 | Sirt1 | SIRT1 | Nucleus, cytoplasm | Deacetylase | Metabolism inflammation | 244-498 (of 766aa) | H3K9ac, H1K26ac, H4K16ac | |||||||||||||||||||||
| b | Hst2 | Sirt2 | SIRT2 | Nucleus and cytoplasm | Deacetylase | Cell cycle, tumorigenesis | 65-340 (of 388aa) | H3K56ac, H4K16ac | Tubulin, Foxo3a, EIF5A, P53, G6PD, MYC | |||||||||||||||||||
| Sirt3 | SIRT3 | Mitochondria | Deacetylase | Metabolism | 126-382 (of 399aa) | H3K56ac, H4K14ac | SOD2, PDH, IDH2, GOT2, FoxO3a | Neurodegenerative diseases, Cancer: B cell chronic lymphocytic leukemia, mantle cell lymphoma, chronic lymphocytic leukemia, breast, gastric | ||||||||||||||||||||
| c | Hst3, | |||||||||||||||||||||||||||
| Hst4 | ||||||||||||||||||||||||||||
| II | Sirt4 | SIRT4 | Mitochondria | ADP-ribosyl transferase | Insulin secretion | 45-314 (of 314aa) | Unknown | |||||||||||||||||||||
| III | Sirt5 | SIRT5 | Mitochondria | Demalonylase, desuccinylase and deacetylase | Ammonia detoxification | 41-309 (of 310aa) | Unknown | |||||||||||||||||||||
| IV | a | Sirt6 | SIRT6 | Nucleus | Demyristoylase, depalmitoylase, ADP-ribosyl transferase and deacetylase | DNA repair, metabolism, TNF secretion | 35-274 (of 355aa) | H3K9ac, H3K56ac | ||||||||||||||||||||
| b | Sirt7 | SIRT7 | Nucleolus | Deacetylase | rRNA transcription | 90-331 (of 400aa) | H3K18ac | Hif-1α, Hif-2α | ||||||||||||||||||||
| U | vauthors = Zhao K, Chai X, Marmorstein R | title = Structure and substrate binding properties of cobB, a Sir2 homolog protein deacetylase from Escherichia coli | journal = Journal of Molecular Biology | volume = 337 | issue = 3 | pages = 731–41 | date = March 2004 | pmid = 15019790 | doi = 10.1016/j.jmb.2004.01.060 }} | vauthors = Schwer B, Verdin E | title = Conserved metabolic regulatory functions of sirtuins | journal = Cell Metabolism | volume = 7 | issue = 2 | pages = 104–12 | date = February 2008 | pmid = 18249170 | doi = 10.1016/j.cmet.2007.11.006 | doi-access = free }} | metabolism | ||||||||
| M | SirTM | ADP-ribosyl transferase | ROS detoxification |
SIRT3, a mitochondrial protein deacetylase, plays a role in the regulation of multiple metabolic proteins like isocitrate dehydrogenase of the TCA cycle. It also plays a role in skeletal muscle as a metabolic adaptive response. Since glutamine is a source of α-ketoglutarate used to replenish the TCA cycle, SIRT4 is involved in glutamine metabolism.
Ageing
Although preliminary studies with resveratrol, an activator of deacetylases such as SIRT1, led some scientists to speculate that resveratrol may extend lifespan, no clinical evidence for such an effect has been discovered, as of 2018.
Tissue fibrosis
A 2018 review indicated that SIRT levels are lower in tissues from people with scleroderma, and such reduced SIRT levels may increase risk of fibrosis through modulation of the TGF-β signaling pathway.
DNA repair in laboratory studies
SIRT1, SIRT6 and SIRT7 proteins are employed in DNA repair. SIRT1 protein promotes homologous recombination in human cells and is involved in recombinational repair of DNA breaks.
SIRT6 is a chromatin-associated protein and in mammalian cells is required for base excision repair of DNA damage. SIRT6 deficiency in mice leads to a degenerative aging-like phenotype. In addition, SIRT6 promotes the repair of DNA double-strand breaks. Furthermore, over-expression of SIRT6 can stimulate homologous recombinational repair.
SIRT7 knockout mice display features of premature aging. SIRT7 protein is required for repair of double-strand breaks by non-homologous end joining.
Inhibitors
Certain sirtuin activity is inhibited by nicotinamide, which binds to a specific receptor site. It is an inhibitor in vitro of SIRT1, but can be a stimulator in cells.
Activators
| Compound | Target/Specificity | References | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Piceatannol | SIRT1 | last1=Manjula | first1=Ramu | last2=Anuja | first2=Kumari | last3=Alcain | first3=Francisco J. | title=SIRT1 and SIRT2 Activity Control in Neurodegenerative Diseases | journal=Frontiers in Pharmacology | date=12 January 2021 | volume=11 | article-number=585821 | doi=10.3389/fphar.2020.585821 | pmid=33597872 | pmc=7883599 | doi-access=free}} | |||||||||||||||||
| SRT-1720 | SIRT1 | ||||||||||||||||||||||||||||||||
| SRT-2104 | SIRT1 | ||||||||||||||||||||||||||||||||
| Beta-Lapachone | SIRT1 | ||||||||||||||||||||||||||||||||
| Cilostazol | SIRT1 | ||||||||||||||||||||||||||||||||
| Quercetin and rutin derivatives | SIRT6 | last1=Rahnasto-Rilla | first1=Minna | last2=Tyni | first2=Jonna | last3=Huovinen | first3=Marjo | last4=Jarho | first4=Elina | last5=Kulikowicz | first5=Tomasz | last6=Ravichandran | first6=Sarangan | last7=A. Bohr | first7=Vilhelm | last8=Ferrucci | first8=Luigi | last9=Lahtela-Kakkonen | first9=Maija | last10=Moaddel | first10=Ruin | display-authors=3 | date=7 March 2018 | title=Natural polyphenols as sirtuin 6 modulators | journal=Scientific Reports | language=en | volume=8 | issue=1 | pages=4163 | bibcode=2018NatSR...8.4163R | doi=10.1038/s41598-018-22388-5 | pmc=5841289 | pmid=29515203}} |
| Luteolin | SIRT6 | ||||||||||||||||||||||||||||||||
| Fisetin | SIRT6 | ||||||||||||||||||||||||||||||||
| Phenolic acid | SIRT6 | ||||||||||||||||||||||||||||||||
| Fucoidan | SIRT6 | ||||||||||||||||||||||||||||||||
| Curcumin | SIRT1, SIRT6 | ||||||||||||||||||||||||||||||||
| Pirfenidone | SIRT1 | ||||||||||||||||||||||||||||||||
| Myricetin | SIRT6 | ||||||||||||||||||||||||||||||||
| Cyanidin | SIRT6 | ||||||||||||||||||||||||||||||||
| Delphinidin | SIRT6 | ||||||||||||||||||||||||||||||||
| Apigenin | SIRT6 | ||||||||||||||||||||||||||||||||
| Butein | SIRT6 | last1=da Silva | first1=Julie Pires | title=Rôle de la sirtuine 1 dans la modulation des réponses apoptotique et autophagique du coeur au stress du réticulum endoplasmique | date=31 May 2018 | publisher=Université Paris Saclay (COmUE) | url=https://tel.archives-ouvertes.fr/tel-01894468 | type=phdthesis | language=fr}} | ||||||||||||||||||||||||
| Isoliquiritigenin | SIRT6 | ||||||||||||||||||||||||||||||||
| Ferulic acid | SIRT1 | ||||||||||||||||||||||||||||||||
| Berberine | SIRT1 | ||||||||||||||||||||||||||||||||
| Catechin | SIRT1 | ||||||||||||||||||||||||||||||||
| Malvidin | SIRT1 | ||||||||||||||||||||||||||||||||
| Pterostilbene | SIRT1 | ||||||||||||||||||||||||||||||||
| Tyrosol | SIRT1 |
References
References
- (June 2004). "Structural basis for nicotinamide cleavage and ADP-ribose transfer by NAD(+)-dependent Sir2 histone/protein deacetylases". Proceedings of the National Academy of Sciences of the United States of America.
- (3 January 2017). "Sirtuins in glucose and lipid metabolism.". Oncotarget.
- (August 2007). "Sirtuin functions in health and disease". Molecular Endocrinology.
- (November 2011). "Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase". Science.
- (April 2013). "SIRT6 regulates TNF-α secretion through hydrolysis of long-chain fatty acyl lysine". Nature.
- (July 2015). "Identification of a Class of Protein ADP-Ribosylating Sirtuins in Microbial Pathogens". Molecular Cell.
- {{EntrezGene. 23410
- (2020). "Biological and catalytic functions of sirtuin 6 as targets for small-molecule modulators". [[Journal of Biological Chemistry]].
- (2018). "Structural and chemical biology of deacetylases for carbohydrates, proteins, small molecules and histones". Communications Biology.
- (July 2009). "Histone deacetylase inhibitors: Potential in cancer therapy". Journal of Cellular Biochemistry.
- Wade N. (2006-11-08). "The quest for a way around aging". International Herald Tribune.
- (2000-02-16). "MIT researchers uncover new information about anti-aging gene". Massachusetts Institute of Technology, News Office.
- (2000). "Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase". Nature.
- (May 2003). "Role for human SIRT2 NAD-dependent deacetylase activity in control of mitotic exit in the cell cycle". Molecular and Cellular Biology.
- (2020-01-01). "SIRT6, a Mammalian Deacylase with Multitasking Abilities". Physiological Reviews.
- (2016-05-25). "Sirtuin functions and modulation: from chemistry to the clinic". Clinical Epigenetics.
- (March 2004). "Structure and substrate binding properties of cobB, a Sir2 homolog protein deacetylase from Escherichia coli". Journal of Molecular Biology.
- (February 2008). "Conserved metabolic regulatory functions of sirtuins". Cell Metabolism.
- (June 2014). "Sirtuins, metabolism, and DNA repair". Current Opinion in Genetics & Development.
- (January 2016). "Molecular and biological hallmarks of ageing.". The British Journal of Surgery.
- (2018). "Emerging anti-aging strategies - scientific basis and efficacy (Review)". Aging and Disease.
- (March 2018). "Sirtuins and accelerated aging in scleroderma". Current Rheumatology Reports.
- (March 2017). "Sirtuins and DNA damage repair: SIRT7 comes to play". Nucleus.
- (April 2010). "Role of SIRT1 in homologous recombination". DNA Repair.
- (January 2006). "Genomic instability and aging-like phenotype in the absence of mammalian SIRT6". Cell.
- (January 2009). "SIRT6 stabilizes DNA-dependent protein kinase at chromatin for DNA double-strand break repair". Aging.
- (July 2012). "Sirtuin 6 (SIRT6) rescues the decline of homologous recombination repair during replicative senescence". Proceedings of the National Academy of Sciences of the United States of America.
- (July 2016). "SIRT7 promotes genome integrity and modulates non-homologous end joining DNA repair". The EMBO Journal.
- (March 2005). "Mechanism of sirtuin inhibition by nicotinamide: altering the NAD(+) cosubstrate specificity of a Sir2 enzyme". Molecular Cell.
- (September 2017). "Nicotinamide is an inhibitor of SIRT1 in vitro, but can be a stimulator in cells". Cell Mol Life Sci.
- (12 January 2021). "SIRT1 and SIRT2 Activity Control in Neurodegenerative Diseases". Frontiers in Pharmacology.
- (7 March 2018). "Natural polyphenols as sirtuin 6 modulators". Scientific Reports.
- (21 June 2017). "The Identification of a SIRT6 Activator from Brown Algae Fucus distichus". Marine Drugs.
- (28 March 2016). "Curcumin elevates sirtuin level but does not postpone in vitro senescence of human cells building the vasculature". Oncotarget.
- (March 2020). "Pirfenidone Is an Agonistic Ligand for PPARα and Improves NASH by Activation of SIRT1/LKB1/pAMPK". Hepatology Communications.
- (31 May 2018). "Rôle de la sirtuine 1 dans la modulation des réponses apoptotique et autophagique du coeur au stress du réticulum endoplasmique". Université Paris Saclay (COmUE).
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