Chromosome 17

Genes

Number of genes

The following are some of the gene count estimates of human chromosome 17. Because researchers use different approaches to genome annotation their predictions of the number of genes on each chromosome varies (for technical details, see gene prediction). The most conservative estimate, from CCDS, represents a lower bound on the total number of human protein-coding genes.

Gene list

The following is a partial list of genes on human chromosome 17. For complete list, see the link in the infobox on the right.

• ABI3: encoding protein ABI gene family member 3
• ABR: encoding protein Abr, rhogef and gtpase activating protein
• ARHGAP44: encoding protein Rho GTPase activating protein 44
• AZI1: encoding protein 5-azacytidine-induced protein 1
• BRCA1P1: BRCA1 pseudogene 1
• C17orf67: encoding protein Chromosome 17 open reading frame 67
• C1QL1: encoding protein complement component 1, q subcomponent-like 1
• CCDC144A: encoding protein Coiled-coil domain-containing protein 144A
• CCDC40: encoding protein Coiled-coil domain containing 40
• CCDC47: encoding protein PAT complex subunit CCDC47
• CCDC57: encoding protein Coiled-coil domain-containing protein 57
• CCL3L3: encoding protein C-C motif chemokine ligand 3 like 3
• CLUH: encoding protein Clustered mitochondria (cluA/CLU1) homolog
• CTAA2: encoding protein Cataract, anterior polar 2
• CTDNEP1: encoding protein CTD nuclear envelope phosphatase 1
• CUEDC1: encoding protein Cue domain containing 1
• DHX8: encoding protein DEAH-box helicase 8
• DPH1 encoding protein Diphthamide biosynthesis protein 1
• DRC3 encoding protein Dynein regulatory complex subunit 3
• FAM106A: encoding protein Family with sequence similarity 106 member A
• FAM20A: encoding protein FAM20A
• GAS7: encoding protein Growth arrest-specific protein 7
• GGT6: encoding protein Gamma-glutamyltransferase 6
• HIGD1B: encoding protein HIG1 hypoxia inducible domain family member 1B
• INCA1: encoding protein Inhibitor of cdk, cyclin a1 interacting protein 1
• JPT1: encoding protein Jupiter microtubule associated homolog 1
• KRTAP locus: encoding ca. 40 Keratin-associated proteins
• LINC00511: producing Long intergenic non-protein coding RNA 511
• LINC00674: producing Long intergenic non-protein coding RNA 674
• LINC00483: encoding protein Long intergenic non-protein coding rna 483
• LRRC37A encoding protein Leucine rich repeat containing 37A
• MAPT-AS1: encoding noncoding RNA MAPT antisense RNA 1
• MBTD1: encoding protein Malignant Brain Tumor domain containing 1
• METTL16: encoding protein Methyltransferase like 16
• MGAT5B: encoding enzyme Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B
• MIR1250: encoding protein MicroRNA 1250
• MIR195: producing MicroRNA 195
• MIR4521: producing MicroRNA 4521
• MIR4727: producing MicroRNA 4727
• MLLT6: encoding protein MLLT6, PHD finger containing
• MRM3: encoding enzyme rRNA methyltransferase 3, mitochondrial
• MSI2: encoding protein Musashi RNA binding protein 2
• MTRNR2L1: encoding protein Mt-rnr2-like 1
• MYBBP1A: encoding protein Myb-binding protein 1A
• MYCBPAP: encoding protein MYCBP associated protein
• NBP: encoding peptide Neuropeptide B
• NME1-NME2:
• NXPH3: encoding protein Neurexophilin-3
• OMG: encoding protein Oligodendrocyte-myelin glycoprotein
• Ormdl sphingolipid biosynthesis regulator 3: encoding protein ORMDL sphingolipid biosynthesis regulator 3
• PLXDC1: encoding protein Plexin domain-containing protein 1
• PNPO: encoding enzyme Pyridoxine-5'-phosphate oxidase
• PPP1R27: encoding protein Protein phosphatase 1, regulatory subunit 27
• PRAL: encoding protein P53 regulation associated lncRNA
• PRCD: encoding protein Progressive rod-cone degeneration
• PRPSAP2: encoding protein Phosphoribosyl pyrophosphate synthetase-associated protein 2
• PRR11: encoding protein Proline rich 11
• PRR29: encoding protein Proline-rich protein 29
• QRICH2: encoding protein Glutamine-rich protein 2
• RAP1GAP2: encoding protein RAP1 GTPase activating protein 2
• RETREG3: encoding protein Reticulophagy regulator 3
• RFFL: encoding enzyme E3 ubiquitin-protein ligase rififylin
• RPAIN: encoding protein RPA-interacting protein
• SC65: encoding protein Synaptonemal complex protein SC65
• SCIMP: encoding protein Slp adaptor and csk interacting membrane protein
• SCPEP1: encoding enzyme Retinoid-inducible serine carboxypeptidase
• SEBOX: encoding protein SEBOX homeobox
• SECTM1: encoding protein Secreted and transmembrane protein 1
• SEPTIN4: encoding Septin4
• SKA2: encoding protein Spindle and Kinetochore Associated
• SLC39A11: encoding protein Solute carrier family 39 member 11
• SLFN13 : encoding protein Schlafen family member 13
• SNF8: encoding protein Vacuolar-sorting protein SNF8
• SPACA3: Sperm acrosome membrane-associated protein 3
• SPAG5: encoding protein Sperm-associated antigen 5
• SPMAP1: encoding protein Sperm microtubule associated protein 1
• ST6GALNAC1: encoding enzyme Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
• ST6GALNAC2: encoding enzyme Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
• STH: encoding protein Saitohin
• TAC4: encoding protein Tachykinin-4
• TBC1D3: encoding protein TBC1 domain family member 3E/3F
• TMEM106A: encoding protein Transmembrane protein 106A
• TMEM94: encoding protein Transmembrane protein 94
• TMEM98: encoding protein Transmembrane protein 98
• TNFSF12-TNFSF13:
• TOM1L1: encoding protein TOM1-like protein 1
• TOM1L2: encoding protein TOM1-like protein 2
• TRIM65: encoding protein Tripartite motif containing 65
• TRPV1: encoding protein Transient receptor potential cation channel subfamily V member 1
• TSEN54: encoding protein TRNA splicing endonuclease subunit 54
• TTYH2: encoding protein Tweety family member 2
• VAT1: encoding protein Synaptic vesicle membrane protein VAT-1 homolog
• VCF1: encoding protein VCF1
• VEZF1: encoding protein Vascular endothelial zinc finger 1
• VPS25: encoding protein Vacuolar protein-sorting-associated protein 25
• VPS53: encoding protein Vacuolar protein sorting 53 homolog (S. cerevisiae)
• WFDC21P: encoding protein WAP four-disulfide core domain 21, pseudogene
• YBX2: encoding protein Y-box-binding protein 2
• ZNF207: encoding protein Zinc finger protein 207
• ZNF830: encoding protein Zinc finger protein 830 Groups of similar genes:
• 60S ribosomal proteins: RPL19, RPL23, RPL23A, RPL26, and RPL38
• ABC transporters, subfamily ABCA: ABCA5, ABCA6, ABCA8, ABCA9, ABCA10
• Arachidonate lipoxygenases: ALOX12, ALOX12B, ALOX15, ALOX15B, ALOXE3
• Amine oxidases, copper containing: AOC1, AOC2, AOC3
• Voltage-dependent calcium channel subunits: CACNA1G, CACNB1, CACNG1, CACNG4, CACNG5
• Several CC chemokines: CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, and CCL23
• CD300 family: CD300A, CD300C, CD300E, CD300LB, CD300LD, CD300LF, CD300LG
• DEAD box helicases: DDX2A (EIF4A1), DDX5, DDX42, DDX48 (EIF4A3), DDX52
• FOX (forkhead box) proteins: FOXJ1, FOXK2, FOXN1
• Homeobox B genes: HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, HOXB13
• Integrin subunits: ITGA2B, ITGA3, ITGAE, ITGB3, ITGB4
• Potassium channel subunits: KCNAB3, KCNH4, KCNH6, KCNJ2, KCNJ12, KCNJ16, KCNJ18
• Kinesins: KIF1C, KIF2B, KIF18B, KIF19
• Type I keratins (acidic): KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT20, KRT23, KRT24, KRT25, KRT26, KRT27, KRT28, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, KRT36, KRT37, KRT38, KRT39, and KRT40
• Mitogen-activated protein kinase kinases: MAP2K3, MAP2K4, MAP2K6
• Mediator complex subunits: MED1, MED9, MED11, MED13, MED24, MED31
• Myosins: MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, MYH13, MYL4, MYO1C, MYO1D, MYO15A, MYO15B, MYO18A, MYO19
• Olfactory receptors: OR1A1, OR1A2, OR1D2, OR1D4, OR1D5, OR1E1, OR1E2, OR1E3, OR1G1, OR3A1, OR3A2, OR3A3, OR3A4, OR4D1, OR4D2
• Proteasome subunits: PSMB3, PSMB6, PSMC5, PSMD3, PSMD11, PSMD12, PSME3
• Rab family: RAB5C, RAB34, RAB37, RAB40B
• RING finger proteins: RNF43, RNF112, RNF135, RNF157, RNF167, RNF213, RNF222, RNF227
• Schlafen family: SLFN5, SLFN11, SLFN12, SLFN12L, SLFN13, SLFN14
• STAT proteins: STAT3, STAT5A, STAT5B
• Tubulins: TUBD1, TUBG1, TUBG2
• Ubiquitin-conjugating enzymes: UBE2G1, UBE2O, UBE2Z
• Ubiquitin-specific proteases: USP6, USP22, USP32, USP36, USP43

The following are some of the genes and their corresponding Cytogenetic location on chromosome 17:

p-arm====

• FLCN: folliculin (17p11.2)
• MYO15A: myosin XVA (17p11.2)
• RAI1: retinoic acid induced 1 (17p11.2)
• PMP22: peripheral myelin protein 22 (17p12)
• CTNS: cystinosin, the lysosomal cystine transporter (17p13)
• USP6: Ubiquitin carboxyl-terminal hydrolase 6 linked to Aneurysmal bone cyst (17p13)
• ACADVL: acyl-coenzyme A dehydrogenase, very long chain (17p13.1)
• SHBG: Sex hormone binding globulin (17p13.1)
• TP53: tumor suppressor protein p53 (Li-Fraumeni syndrome), tumor suppressor gene (17p13.1)
• ASPA: aspartoacylase (Canavan disease) (17p13.3)
• GLOD4: glyoxalase domain containing 4 (17p13.3)

q-arm

• NSRP1: Coiled-coil domain-containing protein 55 (17q11.2)
• FLOT2: flotillin 2 (17q11.2)
• NF1: neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease) (17q11.2)
• SLC6A4: Serotonin transporter linked to Obsessive Compulsive Disorder (OCD) (17q11.2)
• CCL4L1: C-C motif chemokine ligand 4 like 1 (17q12)
• DDX52: DExD-box helicase 52 (17q12)
• ERBB2 loca leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) (17q12)
• GRB7: Growth factor Receptor-Bound protein 7 (17q12)
• BRCA1: breast cancer 1, early onset (17q21)
• GFAP: glial fibrillary acidic protein (17q21)
• RARA or RAR-alpha: Retinoic acid receptor Alpha (involved in t(15,17) with PML) (17q21)
• Type I keratin cluster (17q21.2)
• NAGLU: N-acetyl glucosaminidase, Sanfilippo B syndrome (17q21.2)
• SLC4A1: Band 3 anion transporter protein. Solute carrier family 4, member 1 (17q21.31)
• MAPT gene coding for encoding tau protein (17q21.31)
• CBX1: chromobox homolog 1 (17q21.32)
• HOXB cluster (17q21.32)
• COL1A1: collagen, type I, alpha 1 (17q21.33)
• LUC7L3: LUC7 like 3 pre-mRNA splicing factor (17q21.33)
• NOG: Noggin protein (17q22)
• RPS6KB1 or S6K: Ribosomal protein S6-kinase (17q23.1)
• FTSJ3: FtsJ homolog 3 (17q23.3)
• SCN4A: Voltage-Gated Sodium Channel Subunit Alpha Nav1.4 (17q23.3)
• GALK1: galactokinase 1 (17q24)
• KCNJ2: potassium inwardly-rectifying channel, subfamily J, member 2 (17q24.3)
• ACTG1: actin, gamma 1 (17q25)
• CDC42EP4: CDC42 effector protein 4 (17q25.1)
• USH1G: Usher syndrome 1G (autosomal recessive) (17q25.1)
• CANT1: Calcium-activated nucleotidase 1 (17q25.3)
• BIRC5: Survivin (17q25.3)
• CHMP6: Charged multivesicular body protein 6 (17q25.3)
• ENPP7: ectonucleotide pyrophosphatase/phosphodiesterase 7 (17q25.3)
• RHBDF2: Rhomboid family member 2 (17q25.3)
• TMC6 and TMC8: Transmembrane channel-like 6 and 8 (epidermodysplasia verruciformis) (17q25.3)

Diseases and disorders

The following diseases are related to genes on chromosome 17:

• 17q12 microdeletion syndrome
• Koolen–de Vries syndrome
• Alexander disease
• Andersen–Tawil syndrome
• Aneurysmal bone cyst
• Bipolar disorder
• Birt–Hogg–Dubé syndrome
• Bladder cancer
• Breast cancer
• Bruck syndrome
• Campomelic dysplasia
• Canavan disease
• Cerebroretinal microangiopathy with calcifications and cysts
• Charcot–Marie–Tooth disease
• Chronic lymphocytic leukaemia, tp53
• Corticobasal degeneration
• Cystinosis
• Depression
• Ehlers–Danlos syndrome
• Epidermodysplasia verruciformis
• Frontotemporal dementia and parkinsonism linked to chromosome 17
• Galactosemia
• Glycogen storage disease type II (Pompe disease)
• Hereditary neuropathy with liability to pressure palsies
• Howel–Evans syndrome
• Li–Fraumeni syndrome
• Maturity onset diabetes of the young type 5
• Miller–Dieker syndrome
• Multiple synostoses syndrome
• Neurofibromatosis type I
• Nonsyndromic deafness
• Obsessive–compulsive disorder
• Osteogenesis imperfecta
• Potocki–Lupski syndrome
• Proximal symphalangism
• Sanfilippo syndrome
• Smith–Magenis syndrome
• Usher syndrome
• Very long-chain acyl-coenzyme A dehydrogenase deficiency
• Von Gierke's syndrome

Cytogenetic band

References

• Gene Card Website https://www.genecards.org/cgi-bin/carddisp.pl?gene=SCN4A

References

1. (2 April 2010). "Human Molecular Genetics". Garland Science.
2. Genome Decoration Page, NCBI. [https://ftp.ncbi.nlm.nih.gov/pub/gdp/ideogram_9606_GCF_000001305.14_850_V1 Ideogram data for Homo sapience (850 bphs, Assembly GRCh38.p3)]. Last update 2014-06-03. Retrieved 2017-04-26.
3. Pertea M, Salzberg SL. (2010). "Between a chicken and a grape: estimating the number of human genes.". Genome Biol.
4. (2016-09-08). "Search results - 17[CHR] AND "Homo sapiens"[Organism] AND ("has ccds"[Properties] AND alive[prop]) - Gene".
5. (2024-10-04). "Statistics & download files".
6. (2017-03-29). "Chromosome 17: Chromosome summary - Homo sapiens".
7. (2024-10-02). "Human chromosome 17: entries, gene names and cross-references to MIM".
8. (2017-05-19). "Search results - 17[CHR] AND "Homo sapiens"[Organism] AND ("genetype protein coding"[Properties] AND alive[prop]) - Gene".
9. (2017-05-19). "Search results - 9[CHR] AND "Homo sapiens"[Organism] AND ( ("genetype miscrna"[Properties] OR "genetype ncrna"[Properties] OR "genetype rrna"[Properties] OR "genetype trna"[Properties] OR "genetype scrna"[Properties] OR "genetype snrna"[Properties] OR "genetype snorna"[Properties]) NOT "genetype protein coding"[Properties] AND alive[prop]) - Gene".
10. (2017-05-19). "Search results - 17[CHR] AND "Homo sapiens"[Organism] AND ("genetype pseudo"[Properties] AND alive[prop]) - Gene".
11. "Obsessive Compulsive Disorder".
12. Genome Decoration Page, NCBI. [https://ftp.ncbi.nlm.nih.gov/pub/gdp/ideogram_9606_GCF_000001305.14_400_V1 Ideogram data for Homo sapience (400 bphs, Assembly GRCh38.p3)]. Last update 2014-03-04. Retrieved 2017-04-26.
13. Genome Decoration Page, NCBI. [https://ftp.ncbi.nlm.nih.gov/pub/gdp/ideogram_9606_GCF_000001305.14_550_V1 Ideogram data for Homo sapience (550 bphs, Assembly GRCh38.p3)]. Last update 2015-08-11. Retrieved 2017-04-26.
14. International Standing Committee on Human Cytogenetic Nomenclature. (2013). "ISCN 2013: An International System for Human Cytogenetic Nomenclature (2013)". Karger Medical and Scientific Publishers.
15. (2012). "2012 Ninth International Conference on Computer Science and Software Engineering (JCSSE)".
16. Genome Decoration Page, NCBI. [https://ftp.ncbi.nlm.nih.gov/pub/gdp/ideogram_9606_GCF_000001305.14_850_V1 Ideogram data for Homo sapience (850 bphs, Assembly GRCh38.p3)]. Last update 2014-06-03. Retrieved 2017-04-26.
17. "'''p'''": Short arm; "'''q'''": Long arm.
18. For cytogenetic banding nomenclature, see article [[Locus (genetics). locus]].
19. These values (ISCN start/stop) are based on the length of bands/ideograms from the ISCN book, An International System for Human Cytogenetic Nomenclature (2013). [[Arbitrary unit]].
20. '''gpos''': Region which is positively stained by [[G banding]], generally [[GC-content. AT-rich]] and gene poor; '''gneg''': Region which is negatively stained by G banding, generally [[GC-content. CG-rich]] and gene rich; '''acen''' [[Centromere]]. '''var''': Variable region; '''stalk''': Stalk.