MatrixDB
title: "MatrixDB" type: doc version: 1 created: 2026-02-28 author: "Wikipedia contributors" status: active scope: public tags: ["biological-databases", "polysaccharides"] topic_path: "technology/databases" source: "https://en.wikipedia.org/wiki/MatrixDB" license: "CC BY-SA 4.0" wikipedia_page_id: 0 wikipedia_revision_id: 0
::data[format=table title="infobox biodatabase"]
| Field | Value |
|---|---|
| title | MatrixDB |
| logo | [[File:Database.png]] |
| description | extracellular matrix interactions database. |
| scope | Interactions DataBase, Biochemestry, Biacore, SPR |
| organism | All (Human only possible) |
| laboratory | IBCP - UMR5086 CNRS / Univ Lyon1 - FRANCE |
| author | Emilie Chautard, Guillaume Launay, Nicolas Thierry-Mieg, Romain Salza, Franck Peysselon, Marie Fatoux-Ardore, Sofiane Badaoui, Sylvain Vallet, Lionel Ballut, Dorian Multedo, Sylvie Ricard-Blum. |
| pmid | 20852260 |
| standard | PSI-MI |
| url | http://matrixdb.univ-lyon1.fr |
| :: |
|title = MatrixDB |logo =[[File:Database.png]] |description = extracellular matrix interactions database. |scope = Interactions DataBase, Biochemestry, Biacore, SPR |organism = All (Human only possible) |center = |laboratory = IBCP - UMR5086 CNRS / Univ Lyon1 - FRANCE |author = Emilie Chautard, Guillaume Launay, Nicolas Thierry-Mieg, Romain Salza, Franck Peysselon, Marie Fatoux-Ardore, Sofiane Badaoui, Sylvain Vallet, Lionel Ballut, Dorian Multedo, Sylvie Ricard-Blum. |pmid = 20852260 |released = |standard =PSI-MI |format = |url = http://matrixdb.univ-lyon1.fr |download = |webservice = |sql = |sparql = |webapp = |standalone = |license = |versioning = |frequency = |curation = MatrixDB is a biological database focused on molecular interactions between extracellular proteins and polysaccharides. MatrixDB takes into account the multimeric nature of the extracellular proteins (for example, collagens, laminins and thrombospondins are multimers). The database was initially released in 2009 and is maintained by the research group of Sylvie Ricard-Blum at UMR5246, Claude Bernard University Lyon 1.
MatrixDB is linked with UniGene and the Human Protein Atlas. It also allows users to build customised tissue- and disease-specific interaction networks, which can be further analysed and visualised using Cytoscape or Medusa.
MatrixDB is an active member of the International Molecular Exchange Consortium (IMEx),{{Cite journal | last1 = Orchard | first1 = S. | last2 = Kerrien | first2 = S. | last3 = Abbani | first3 = S. | last4 = Aranda | first4 = B. | last5 = Bhate | first5 = J. | last6 = Bidwell | first6 = S. | last7 = Bridge | first7 = A. | last8 = Briganti | first8 = L. | last9 = Brinkman | first9 = F. | last10 = Cesareni | doi = 10.1038/nmeth.1931 | first10 = G. | last11 = Chatr-Aryamontri | first11 = A. | last12 = Chautard | first12 = E. | last13 = Chen | first13 = C. | last14 = Dumousseau | first14 = M. | last15 = Goll | first15 = J. | last16 = Hancock | first16 = R. | last17 = Hannick | first17 = L. I. | last18 = Jurisica | first18 = I. | last19 = Khadake | first19 = J. | last20 = Lynn | first20 = D. J. | last21 = Mahadevan | first21 = U. | last22 = Perfetto | first22 = L. | last23 = Raghunath | first23 = A. | last24 = Ricard-Blum | first24 = S. | last25 = Roechert | first25 = B. | last26 = Salwinski | first26 = L. | last27 = Stümpflen | first27 = V. | last28 = Tyers | first28 = M. | last29 = Uetz | first29 = P. | last30 = Xenarios | first30 = I. | title = Protein interaction data curation: The International Molecular Exchange (IMEx) consortium | journal = Nature Methods | volume = 9 | issue = 4 | pages = 345–350 | year = 2012 | pmid = 22453911 | pmc =3703241
References
References
- (17 September 2010). "MatrixDB, the extracellular matrix interaction database". Nucleic Acids Research.
- (15 January 2009). "MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions". Bioinformatics.
- (17 December 2004). "The Biomolecular Interaction Network Database and related tools 2005 update". Nucleic Acids Research.
- (24 November 2011). "The IntAct molecular interaction database in 2012". Nucleic Acids Research.
- (Feb 20, 2002). "MINT: a Molecular INTeraction database.". FEBS Letters.
- (1 January 2006). "MPact: the MIPS protein interaction resource on yeast". Nucleic Acids Research.
- (2004). "The HUPO PSI's Molecular Interaction format—a community standard for the representation of protein interaction data". Nature Biotechnology.
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